rs37393127 SNP Detail

Summary

• ID
  rs37393127
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:68942422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGTGGGTG CTTTAGTCAT
  TAATGTATAA TGGGAACTGG TCAATTGGGG GCCTCTCCAG CTGTGCTTAG AAAGTCAGGT
  TTACCTGACT TTTTCTCTTG AAATTTGCCT GAATTAGATA TAGTTTTTCT AAGTTTCGAA
  CGTGGTAATT CCTTTGTTCT CTCTCTATTC TGGGAACTGA CCACTCAGAG TGCAAAGGTG
  R
  ATACAACAGA GCAAATATCC TTAGGAGACT CTCAATATAG TAACACACAC ACACACACAC
  ACACACACAC ACACACACAC ACACACACAC ACTGGGAGGA GTGGGAAAGA AAGGTGGGAA
  GGGAGGGAGG AGAGATGACA AATATCTAGA ATCTAATTCA GGAAGGGCCA AGGAGATACC
  AGGATCTGTG GGAAGACAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50730504	NES14249516	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37393127					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50730504	NES14249516	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:68942422 () rs orientation: forward

Symbol	Name	Function Class
Rora	RAR-related orphan receptor alpha	within coordinates
Rr682107	regulatory region 682107	218 bp distal
Tssr90367	transcription start site region 90367	841 bp upstream
Tssr90368	transcription start site region 90368	790 bp upstream
Tssr90369	transcription start site region 90369	672 bp upstream