rs37393431 SNP Detail

Summary

• ID
  rs37393431
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:68733936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACGCAACT GCTTTCGATG
  TGCCTGGCTG GGTTGTGAGC TCCAAGCCTG ACCCTTACCC TTCTCATTGC CCCCCCACCC
  CGGTCTCCAA CTCTCTAAGA GAAGACATCA GATCTGCTTG CTTCTTAGGA TGATGCCTGG
  CGTCTGTGCT AATGCACGTT GCTGTGCATC TGGGAGAACC CTTGTGTGGA AAACAGGAGC
  Y
  CTTAGCAAAA ATCTTCCCTC CGTGCCCTTT TCTCTTCTCA AACATAGCCT GGGCAAGTAT
  AAGAGCGGCC ACTGAGGATG AAGATGCTGA TGGCCTCTAA CCACCGGCCT CTGCAGGTCT
  CCCTCCCATC TTCATCCTCA GTCTAAATTC TTGAGACAAA GTACAGTTTT CCAATCCTAC
  CCTCCCCCCC CCCAACCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50732742	NES14244251	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37393431					SNP	T	T	T	T	C	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50732742	NES14244251	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:68733936 () rs orientation: forward

Symbol	Name	Function Class
Rora	RAR-related orphan receptor alpha	within coordinates
Rr210394	regulatory region 210394	within coordinates
Rr383535	regulatory region 383535	1042 bp upstream
Tssr85828	transcription start site region 85828	1862 bp downstream