rs37394794 SNP Detail

Summary

• ID
  rs37394794
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:6098175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGTCCAGCC CCAGCATGGC AGTGAGTTCA GGGCTCAGGG
  AAGAAGGAAT GCCCGGGGAG GGAAGGAGGG GCAGAAGTGG GGCTACATGT CATAGAAGTA
  K
  GAGAGAAATA GCCCTGGGCC GCCTGACTTG GAATTATCTA TGACAGTCTT GGGGACCTGT
  CAGAATGATT AGCCCCAGGC AGGGGAAAGC AGAAAATAAC                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50575686	NES13653249	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37394794					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50575686	NES13653249	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6098175 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi10491	CpG island 10491			412 bp distal
D530017H19Rik	RIKEN cDNA D530017H19 gene			716 bp upstream
Gm59262	predicted gene, 59262			1656 bp downstream
Rr370438	regulatory region 370438			1453 bp downstream
Rr543277	regulatory region 543277			1473 bp distal
Rr543279	regulatory region 543279			1134 bp distal
Rr543280	regulatory region 543280			1031 bp distal
Rr543281	regulatory region 543281			727 bp distal
Rr543282	regulatory region 543282			816 bp distal
Rr543283	regulatory region 543283			753 bp distal
Rr543284	regulatory region 543284			226 bp distal
Syvn1	synovial apoptosis inhibitor 1, synoviolin			Intron
				Noncoding-Transcript-Variant
Tssr154539	transcription start site region 154539			1500 bp downstream
Tssr154540	transcription start site region 154540			1104 bp downstream
Tssr154541	transcription start site region 154541			1065 bp downstream
Tssr154542	transcription start site region 154542			1042 bp downstream
Tssr157817	transcription start site region 157817			1114 bp upstream
Tssr157818	transcription start site region 157818			721 bp upstream