rs37397686 SNP Detail

Summary

• ID
  rs37397686
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:128813679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTTGGTCT CTACCTCTCT
  CTATGCTCGA GCTTTACCTA TCTCTGCCTG GACCTTGACA CCTCCTTATT GTTCTGGGCC
  TATTTCCCAC CTTAACCTGT TCTCAGGCTT CATCCCCATC TCTCCTTGTG CCTAAGCCTG
  GTCCACATCC CTTCTCCTAC CTGTCCTCAC TTCTCTATTG TTCTTGGACC TCTTCCACAC
  R
  TCTCCCTGTG TCTGAGCCTG GTTCCAGTTC CCCGATCTTT GGAGCCTGGT TCCTACCTTG
  CCATGCCAAA GCACACAATA GCATCTCTGA CTGTATCCCC ATCTGCTGCA GCCTCCAGCT
  CTCTCTAGCT GTATCACACC TGTTTCACAC CTGCCTACCT GTCCTTTCCC ATCTGAACCC
  CAGTCGTTAC CACAGCTGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51843715	NES14705144	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37397686					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51843715	NES14705144	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:128813679 () rs orientation: forward

Symbol	Name	Function Class
4930553I04Rik	RIKEN cDNA 4930553I04 gene	586 bp upstream
Cpgi16665	CpG island 16665	213 bp distal
Gm71554	predicted gene, 71554	554 bp upstream
Piwil1	piwi-like RNA-mediated gene silencing 1	within coordinates
Tssr1644	transcription start site region 1644	454 bp downstream
Tssr48983	transcription start site region 48983	522 bp downstream
Tssr48984	transcription start site region 48984	483 bp downstream
Tssr48985	transcription start site region 48985	428 bp downstream
Tssr48986	transcription start site region 48986	368 bp downstream
Tssr53471	transcription start site region 53471	597 bp upstream