rs37398247 SNP Detail

Summary

• ID
  rs37398247
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:101074953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTGGGAAA AGTATCTCAA
  TTATCTACTT CAGTTTTTCA GCATCAGTGC ATTACGTAGT CAGTCTGAAC AGCCACTGCT
  ATTGTCATTA TAATATTTCC AATATTTGAC CATTCTGACA CACAGAAAGA AAAGAAATGT
  CATATACCTC ACCCCCCAAA TTTGAAGTTT TTCTGGGTCA GAATAACTAT AAAATTATGG
  Y
  TCCTTGCTGG AATTTGGATA GTTAGCATTT ATATAGTCCC TTCTCCCTTT TTTTTTGTAT
  TGTATTCCAC GTTAGGCAAC CTATGTGGTG AGATAGACAC TGGCCCTAAG ATAGTAAGCA
  GTGTAGCAGA GACTAGTCAT CGAAGGCTGC AATCAGTATC AGCTTGCTAG AGGATGGCAT
  TTATTTAAAA TTTAGAAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50785743	NES14211521	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	T	C	C		T	T	T	T		C
ss136865163	ENSMUSSNP3912235	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss323148485	CHEV_9_101100084	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37398247					SNP	C	C	C	C	C	C	C	T	C	C	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50785743	NES14211521	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:101074953 () rs orientation: forward

Symbol	Name	Function Class
Gm67595	predicted gene, 67595	within coordinates
Ppp2r3a	protein phosphatase 2, regulatory subunit B'', alpha	within coordinates
Rr685595	regulatory region 685595	1309 bp proximal
Tssr91107	transcription start site region 91107	1186 bp downstream
Tssr91108	transcription start site region 91108	1222 bp downstream
Tssr91109	transcription start site region 91109	1245 bp downstream
Tssr91110	transcription start site region 91110	1327 bp downstream