rs37398882 SNP Detail

Summary

• ID
  rs37398882
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:35022905 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGCTAGG GCTACACAGT
  GAGCAAGGCA GACAAGACCC TAGAGCTTGA AGTCCTAAAC CTTCCAGGAG GAAGACACCT
  TACAAGTGTT CAGATCCATG CCACACTACG AACATGCCTG CCAGTCCTTT GTCTTTCCCC
  GGCACTGTCC CCGTTTCTGT CAAGGTCACG GATGTGTCTC AATGACTTTC AATGGCCATC
  R
  CACAGCCTGC TTCTAAAACT TGCAGGTAGC CATCTGAAGA AGCCCTAGCT GCTGCCTTTC
  CCTACCCAGC TGGTGCAGTC TTCGACAAGG AGATGAACAG ACCACTTCCA TGAAAATGTG
  CATCTCCACC CTCTGGTTCT GTGACAATCG CTTGGGATCA AAGTAACTAT AGCTGAATTT
  TCCCATTCCC AGAGCTCCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss50670799	NES14013380	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G		A	G	G		G
ss322899077	CHEV_9_34919194	CHEVERUD	SCREENING_POP	f	SNP								A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs37398882					SNP	G	G	G	G	A	G	G	A	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50670799	NES14013380	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:35022905 () rs orientation: forward

Symbol	Name	Function Class
Rr206179	regulatory region 206179	95 bp proximal
Rr383192	regulatory region 383192	within coordinates
St3gal4	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	within coordinates