rs37399591 SNP Detail

Summary

• ID
  rs37399591
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:128812193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTTAGTAG GAGATTATGG
  GGCTGAGAAT CCATCACCCC ACCCCTCCCA GCTCCTGGCA AGTATATTTC CTCATTAGTA
  AATGTAACAT CTGCTTTCTA AGTGGAACTT TCAAGCAAGC CCGAGAGAAA ACCATGTCTA
  TAGATTAAAT ATTCCTATTC TGAAACCTCC AAGTCTGAAG TGCTTCAAAA ATCAACATGA
  M
  AACAGACATG TCACTAGTAG GGAATCCCAC AGTTGACCCC ACAAGATGGC CCCAGAATGC
  AGGTACACTA AAGACCTGGC ATAAAATCAC CTTTAGTCTG TTTCTAAGGT AAGCTTGAAA
  CTAGAGTGAA TTCCATGGTT TTATTTCACT CACAAGACAA CCTCATTTGG TATACGCAAA
  TATTTAGATA GCAAAAATGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51843735	NES14705132	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs37399591					SNP	A	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51843735	NES14705132	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:128812193 () rs orientation: forward

Symbol	Name	Function Class
4930553I04Rik	RIKEN cDNA 4930553I04 gene	231 bp downstream
Cpgi16665	CpG island 16665	719 bp proximal
Gm71554	predicted gene, 71554	223 bp downstream
Piwil1	piwi-like RNA-mediated gene silencing 1	942 bp upstream
Rr621172	regulatory region 621172	813 bp distal
Rr621173	regulatory region 621173	933 bp distal
Tssr1644	transcription start site region 1644	1031 bp upstream
Tssr48983	transcription start site region 48983	957 bp upstream
Tssr48984	transcription start site region 48984	996 bp upstream
Tssr48985	transcription start site region 48985	1039 bp upstream
Tssr48986	transcription start site region 48986	1113 bp upstream
Tssr53471	transcription start site region 53471	882 bp downstream