rs37399825 SNP Detail

Summary

• ID
  rs37399825
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:34485034 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T GTCCCTGCCT CATGAGTGCT CAGACTAAAG GCGTGCACCT
  CCACAGCCCA GCTCTGTACA TTTCTTATGG CTACCATAAG GGATTCTTGT GGAGCTGATA
  R
  TTTAACAGAA ATTGGTTCAT GGTGCGAGGT GAGGGTGTTC ACTCCCTAAG GCTGAGTGTG
  TTGGGGATGG GGGTGTGTTT GCTCTTCGGC TTCTGATGGC T                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51237428	NES14285384	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	A	A	A	A	G	G	A	A	G	G
ss148888950	ENSMUSSNP6815638	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37399825					SNP	G	G	A	A	A	G	A	A	A	A	G	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51237428	NES14285384	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:34485034 () rs orientation: forward

Symbol	Name	Function Class
D1Ertd448e	DNA segment, Chr 1, ERATO Doi 448, expressed	within coordinates
Gm28306	predicted gene 28306	1223 bp upstream
Imp4	IMP4, U3 small nucleolar ribonucleoprotein	within coordinates
Tssr6217	transcription start site region 6217	1049 bp downstream
Tssr6218	transcription start site region 6218	1078 bp upstream