rs37400089 SNP Detail

Summary

• ID
  rs37400089
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:53292745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCCTCAAG CCTAAAAACT
  CATGCATTTG TCAATGTAGT AAGATTTCCT ATCAGTGTTT CATGAAATCC TGCCTTCATT
  CCTCCCCTAC ATTTCTCATT TGGGATATTC ACTGTAGGTG TTTCTCCTAT AGCTCTCTGA
  GGTTGTTTCT ACACAGTCTA AACTGTTCTT TAACCTGTCT ATCCAGTTTC TCAATTCGTA
  K
  GTATTGCTTC TATAAGGTCT GCTTGGTTCC CTTTTGAATC CACCACTTGT TCTTCTGATG
  ATTTTCATTC TTTCCTATAA AGAACAAGTC CCCTGGCTTC ACTGTGTACT GGCCATCCAC
  TCATCCTGTA CAGAGCTCTG TGAGTGTGCT TTGTAATTTT TCATGGTAGG ATTTCTTTGG
  AAATAGCTTG AGGATAGGAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ
ss51115725	NES14349731	PERLEGEN	MM_PANEL2	f	SNP	G	T	G	T
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ
rs37400089					SNP	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51115725	NES14349731	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:53292745 () rs orientation: forward

Symbol	Name	Function Class
Ror2	receptor tyrosine kinase-like orphan receptor 2	within coordinates
Rr388452	regulatory region 388452	142 bp upstream