rs37404645 SNP Detail

Summary

• ID
  rs37404645
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:49289497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAATACAGC TGGAAGCATT
  ATTTATTCAA CTGAGCTACT ACTAGGTACT ATATGTCCTC AGTTATCGCT TCTCGGCCTT
  TTGGCTAAGA TCAAGTGTAT ATGTCCTCAG TTATTTAGAC TATTAAAGGT CTCATATGAT
  TTTTATGAAC TGCAGCATAT GCAAGGAAAT ACATCATGGG AAGGTTGTAA ACTTGAAAGT
  W
  ATCCAAAGTA TGTAATATTT CAATTACTGT TTTTTTTTCA TTTTATGAAT ATAAAAATAA
  TCTTGCTGAA TATGTCACTG TCACATTGTG TGGGTGTGTA ACATCAAAAG AAAAAGAATA
  TATAGGGGGA GAAGATCACT TCAAACATAG TATTAAATAA GTTTATATGG TATAGCTTGG
  AATATGCAAG ATACAATTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
ss51106814	NES13870965	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
rs37404645					SNP	T	T	T	T	T	T	A	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51106814	NES13870965	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:49289497 () rs orientation: forward

Symbol	Name	Function Class
Kcnip4	Kv channel interacting protein 4	within coordinates
Tssr50936	transcription start site region 50936	1083 bp upstream
Tssr50937	transcription start site region 50937	126 bp upstream