rs37411617 SNP Detail

Summary

• ID
  rs37411617
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:87973777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGGCCTCA CTTCTCCCAG
  ACTTTATCCT TCGTAATTTA AAATATTATC CTCATACTTA ATACAATTCT TCTGCCTTTC
  TACGCTGAAG CAACTCTCCC TGGACAATAT CTGGCCATGT AAGACTCTGA AATGAATGTT
  GACTTCTGTT CCGTTCTAAG CCTCTGAGTC TCGAAGTAAG TTTCTTTTCT CAACTTTGAC
  R
  GTCACTAAAG GCTATCACAT TGTGTTTTTA TCAGAATTAA AGTTAGCACT CCTCCTAACA
  TTACCTTAAG TTTTGAGAAT ATTTCCCTTT CTATTTGGAT ATATTGAATC TATGGAGTAT
  AAACACTACT CATTTCTTGA TACATCGATA ACATTATTTT AATCATGGTG TGATATGCTA
  AATGTTAGAT ATTCATAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51174238	NES13832860	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs37411617					SNP	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51174238	NES13832860	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:87973777 () rs orientation: forward

Symbol	Name	Function Class
Csn1s2b	casein alpha s2-like B	1497 bp downstream
Gm42794	predicted gene 42794	within coordinates
Prr27	proline rich 27	within coordinates
Tssr46931	transcription start site region 46931	164 bp downstream
Tssr46932	transcription start site region 46932	147 bp downstream