rs37415021 SNP Detail

Summary

• ID
  rs37415021
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:92423189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCAGGCCC AAGTCTGGAT
  TTCTGGAAAC ATATTTAGCC AAATGACCAG CCCTTCTTCT GAGGGCTGAT TCTACTTGCC
  CCTGCTTGGA TTCATGACGC TGCACCTGCC ACCCACACTG TAAAAGAATC CACTTCTTAG
  CTGACCCTCT TCAGAGAAAA AAAAGTTTCA CTTCATTCTT CCTTACTCCA TTCTTCTGCA
  R
  TCACAGTTTC CATTTCTTTG ACTATTTCTA CTCATGTCTG AAGTTTCCCC AATTTTCCTT
  TATTAAAAAG AGGGAGGAGG ACAGACACAC CAAGACCTTC AAAACAGCAA GGACTGGCTC
  AGTCTCATGA TTATTTTTTC CTTTAAATGT CACACTCCTA ATATTTACAC ATTTTCCCAC
  CTGCTTTCAA TCTGCTAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J
ss52036453	NES15053653	PERLEGEN	MM_PANEL2	f	SNP	G	A	A		G	G
ss323074143	CHEV_9_92435974	CHEVERUD	SCREENING_POP	f	SNP				G			A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J
rs37415021					SNP	G	A	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52036453	NES15053653	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:92423189 () rs orientation: forward

Symbol	Name	Function Class
B430319G15Rik	RIKEN cDNA B430319G15 gene	within coordinates
Cpgi22147	CpG island 22147	721 bp proximal
Gm37545	predicted gene, 37545	1053 bp upstream
Plod2	procollagen lysine, 2-oxoglutarate 5-dioxygenase 2	1087 bp upstream
Rr684632	regulatory region 684632	597 bp proximal
Rr684633	regulatory region 684633	1782 bp proximal
Rr684634	regulatory region 684634	1909 bp proximal
Tssr86520	transcription start site region 86520	1119 bp upstream
Tssr86521	transcription start site region 86521	1294 bp upstream