rs37416402 SNP Detail

Summary

• ID
  rs37416402
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:25112607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGTATACT TGCCAGATAG
  CTGTAGAGAT GTGGAAATAA TATCCATACA CAGGTTATAA AGGACTTGTA GAAGCTAGTT
  TGACGGAAGG CAAGAGGCTT CTGGTGGGGG TGGTCACTTG TTAGTAGCAT ATTGAATAAC
  TTTGAGGAAG TCAATTTTCC TGTGTGAAAC TCAGGTTTCT CTATATGCAA GTTATAGATG
  Y
  CAATGATATT GAAGTTATGA AGGGCTCTAG TTCAAACTAT TTTTAGATTT TAATTAAAAT
  ATAATTACAT CACCTTTCCT CTTTTCTTTC CCCTTGTACC TCTTCTTCTT TCAACCTGCC
  TCATGTTCTT CCCTCACCCT CTAAAATTGA GGCTCTCCTT TTCTTTGATG ATAATTGTTA
  CATGTACATG TAGACACATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	WSB/EiJ
ss51566211	NES14861521	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	WSB/EiJ
rs37416402					SNP	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51566211	NES14861521	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:25112607 () rs orientation: forward

Symbol	Name	Function Class
Rr379084	regulatory region 379084	204 bp downstream