rs37421180 SNP Detail

Summary

• ID
  rs37421180
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8060312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGGTATGA CTGTCAAAGT
  AAACAATCAG CTCACCCTTG ACAGTCACAC AAAGTACTTC CACAAGTTGA GTGTTCCTAG
  GCTGGACTTC TCCAGTAAGG CTTCTCTTAA TAATGAAATC AAGACACTAT TAGAAGCTGG
  ACATGTGGCA TTGACATCTT CAGGGACAGG GTCATGGAAC TGGGCCTGTC CCAACTTCTC
  R
  GATGAAGGCA TACATTCGTC CCAAATTAGC TTTACTGTGG ATGGTCCCAT TGCTTTTGTT
  GGACTATCCA ATAACATAAA TGGCAAACAC TTACGGGTCA TCCAAAAACT GACTTATGAA
  TCTGGCTTCC TCAACTATTC TAAGTTTGAA GTTGAGTCAA AAGTTGAATC TCAGCACGTG
  GGCTCCAGCA TTCTAACAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50958142	NES14429018	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37421180					SNP	G	G	G	G	G	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50958142	NES14429018	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8060312 () rs orientation: forward

Symbol	Name	Function Class
Apob	apolipoprotein B	within coordinates
Tssr3782	transcription start site region 3782	1600 bp downstream
Tssr112645	transcription start site region 112645	1920 bp downstream
Tssr112646	transcription start site region 112646	1891 bp downstream
Tssr112647	transcription start site region 112647	1719 bp downstream
Tssr112648	transcription start site region 112648	1697 bp downstream
Tssr112649	transcription start site region 112649	1215 bp downstream
Tssr112650	transcription start site region 112650	1135 bp downstream
Tssr112651	transcription start site region 112651	1083 bp downstream
Tssr112652	transcription start site region 112652	1053 bp downstream
Tssr112653	transcription start site region 112653	1034 bp downstream
Tssr112654	transcription start site region 112654	1020 bp downstream
Tssr112655	transcription start site region 112655	997 bp downstream
Tssr112656	transcription start site region 112656	977 bp downstream
Tssr112657	transcription start site region 112657	963 bp downstream
Tssr112658	transcription start site region 112658	930 bp downstream
Tssr112659	transcription start site region 112659	851 bp downstream
Tssr112660	transcription start site region 112660	727 bp downstream
Tssr112661	transcription start site region 112661	492 bp downstream
Tssr112662	transcription start site region 112662	251 bp downstream
Tssr112663	transcription start site region 112663	10 bp downstream
Tssr112664	transcription start site region 112664	within coordinates
Tssr112665	transcription start site region 112665	164 bp upstream
Tssr112666	transcription start site region 112666	173 bp upstream
Tssr112667	transcription start site region 112667	220 bp upstream
Tssr112668	transcription start site region 112668	358 bp upstream
Tssr112669	transcription start site region 112669	443 bp upstream
Tssr112670	transcription start site region 112670	496 bp upstream
Tssr112671	transcription start site region 112671	611 bp upstream
Tssr112672	transcription start site region 112672	1190 bp upstream
Tssr112673	transcription start site region 112673	1233 bp upstream
Tssr112674	transcription start site region 112674	1334 bp upstream
Tssr112675	transcription start site region 112675	1361 bp upstream
Tssr112676	transcription start site region 112676	1464 bp upstream
Tssr112677	transcription start site region 112677	1614 bp upstream
Tssr112678	transcription start site region 112678	1738 bp upstream
Tssr112679	transcription start site region 112679	1763 bp upstream
Tssr112680	transcription start site region 112680	1782 bp upstream
Tssr112681	transcription start site region 112681	1829 bp upstream
Tssr112682	transcription start site region 112682	1842 bp upstream
Tssr112683	transcription start site region 112683	1879 bp upstream
Tssr112684	transcription start site region 112684	1923 bp upstream
Tssr112685	transcription start site region 112685	1971 bp upstream