rs37428405 SNP Detail

Summary

• ID
  rs37428405
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:128813684 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCTCTACC TCTCTCTATG
  CTCGAGCTTT ACCTATCTCT GCCTGGACCT TGACACCTCC TTATTGTTCT GGGCCTATTT
  CCCACCTTAA CCTGTTCTCA GGCTTCATCC CCATCTCTCC TTGTGCCTAA GCCTGGTCCA
  CATCCCTTCT CCTACCTGTC CTCACTTCTC TATTGTTCTT GGACCTCTTC CACACGTCTC
  Y
  CTGTGTCTGA GCCTGGTTCC AGTTCCCCGA TCTTTGGAGC CTGGTTCCTA CCTTGCCATG
  CCAAAGCACA CAATAGCATC TCTGACTGTA TCCCCATCTG CTGCAGCCTC CAGCTCTCTC
  TAGCTGTATC ACACCTGTTT CACACCTGCC TACCTGTCCT TTCCCATCTG AACCCCAGTC
  GTTACCACAG CTGGTGTTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51843713	NES14705146	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37428405					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51843713	NES14705146	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:128813684 () rs orientation: forward

Symbol	Name	Function Class
4930553I04Rik	RIKEN cDNA 4930553I04 gene	591 bp upstream
Cpgi16665	CpG island 16665	218 bp distal
Gm71554	predicted gene, 71554	559 bp upstream
Piwil1	piwi-like RNA-mediated gene silencing 1	within coordinates
Tssr1644	transcription start site region 1644	459 bp downstream
Tssr48983	transcription start site region 48983	527 bp downstream
Tssr48984	transcription start site region 48984	488 bp downstream
Tssr48985	transcription start site region 48985	433 bp downstream
Tssr48986	transcription start site region 48986	373 bp downstream
Tssr53471	transcription start site region 53471	602 bp upstream