rs37430150 SNP Detail

Summary

• ID
  rs37430150
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5709837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGATGACCC GGTAGCTGTG
  TAGGGTGCCC CCTCCGCTGC CCTCTTTCTC CTCCCGTCGC AGGCTCACGG CCACCGGACC
  CAGCGCCTCA TCCAGCCCAA AGAAGTTCTG GTGTTCTGTG GGGGTGGGGG TGGGGGGTCG
  TTGGTTGGTC GGTCGGTGGC CTTTCAGTCA AACCCACAGA CCACCCTATC CCTTCTTGAC
  Y
  ACGCCCACCA CAGAAGTACC ACCCTAGGTA TTCTCTCACC AAGCGCTGAA CCTGGGAGTT
  CACTCCCACC CCAGTTTGCA GTCCCACCCA CGGTTACACC TTGTCCCAGG ACCAGGGAAC
  AAATGTCTAA GTCCTCCTAG GTTAAATGCT GCCCTGGCTC CACCAAAGCT TAGGTTCTCC
  CATTCAAGAC ACGGAAGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss50578098	NES13650495	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs37430150					SNP	T	T	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50578098	NES13650495	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5709837 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10466	CpG island 10466	926 bp proximal
Sipa1	signal-induced proliferation associated gene 1	within coordinates
Tssr157621	transcription start site region 157621	1558 bp upstream
Tssr157622	transcription start site region 157622	1816 bp downstream