rs37431422 SNP Detail

Summary

• ID
  rs37431422
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:46653402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATATTAGA AGTGTGCACA
  TTGTATATGG GGTCTGAAGA GCATGCTTGG TTCACCAAGC TTGCAAGGTT AGCACTTTGC
  CAACTGAGAC ATCTTCCCTC CTCCAGGCTG AGTTTCAAGG TGCTGGAGTC AGCTACTACG
  TTGAGATTCA CAGAAAAAAA GTTCATTCAA AACTTTTGTC CTATGTAAAG AAGAACAGAC
  R
  TTAGAATAGG GCTGAACACA CTGAACATGC TTCATTCGTT CTTCTCTTTG ACCACCACAC
  ACAAACAAGA CATTGCAATG CACCATTTAC ATGGCATTTA TAACATATCC CAATATGTAA
  TATTGTAAAA ACTGTAAAGC CATCTGGATG CGATCAGAGT GCAAGAAGGT TGCAGAAGTT
  TGTGACCACA CATGCCATGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51103947	NES14353339	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37431422					SNP	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51103947	NES14353339	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:46653402 () rs orientation: forward

Symbol	Name	Function Class
Cap2	cyclase associated actin cytoskeleton regulatory protein 2	1977 bp upstream
Cpgi5539	CpG island 5539	1857 bp proximal
Gm35110	predicted gene, 35110	within coordinates
Rr478915	regulatory region 478915	1751 bp proximal
Rr478916	regulatory region 478916	1933 bp proximal
Tssr119597	transcription start site region 119597	1933 bp upstream
Tssr119598	transcription start site region 119598	1972 bp upstream