CGACACACCA ACGTGATAGT GCACGCCTGC AATCCCAGCA TTTGGGAGCT GATGACAGGG GGATTAAAAG TTCAAGGTAA TCCCCAGTTA CAGATGGAAT TGAAGCTAGC TTGGGTTAAA TGCAACTTTG TTTCAAAAAC AAACAACCCT CCTTTGTCAT TTTAATACAA CAGTGGCAAC AATCATAATG TTATTGTCAC S GTCATTGTTG ACTCACTAAT GTCCTTATGA AAACCAGACA CTGGCTTTAC TCCTTTGATT CTCATGGGGG ATGAGAGCTA TTATATTACA GATGCTGAGA GGGAGGTAAA GGGAGGGCTT CCAGGAGCAC ACGGGTAGGA AAAGGCAAGA CTGAAGGCAC ACCACCATGC CTGCCCCACA CCTTGTGTGG TAGCACAGCT S = C/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss51118306 | NES13854516 | PERLEGEN | MM_PANEL2 | f | SNP | G | G | G | G | G | G | C | G | G | G | G | G | C |
SNP Consensus Information | ||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
||||
rs37433213 | SNP | G | G | G | G | G | G | C | G | G | G | G | G | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss51118306 | NES13854516 | PERLEGEN | MM_PANEL | f | SNP | C/G |
Location: Chr5:52520519 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Rr611419 | regulatory region 611419 | 1974 bp distal | ||||||
Rr611420 | regulatory region 611420 | 209 bp proximal | ||||||
Rr611421 | regulatory region 611421 | 625 bp proximal | ||||||
Sod3 | superoxide dismutase 3, extracellular | 627 bp upstream | ||||||
Tssr46168 | transcription start site region 46168 | 735 bp upstream | ||||||
Tssr46169 | transcription start site region 46169 | 748 bp upstream | ||||||
Tssr46170 | transcription start site region 46170 | 779 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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