rs37435679 SNP Detail

Summary

• ID
  rs37435679
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:66593202 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGTCCAGA ATGCCTGTGG
  CCCTGGAATC TTTGAGCTGC TTTTTGCATT TCTCCCTTTT GAGAAAGTAC TAATTGCTCA
  TAGAAATCAG GATTTCTCGA TTGATGTGCT ACGTTTAATA CATTACACCC TAAAGAGTGT
  TTTGTGAATA TTTCTGAAAA ATATTTGACC CTGGAACTCA TTAAAACATG ATACATTATG
  R
  AATCTCTTAG GGCCTCTGAT TTCACTCAGT CAATACAGAA ATTTATCCAA AAATAGGTTT
  AAGAGCTTGC TTTACTATGT ACTTAAAGTT CGAGTTCACT GGAAGTCTAA ACAGCAGATA
  TCTTGGTTAC AAAACAGACC AGCTTTTAAA TTTGTATTCA TAATTTTTGG TCATAGTCTT
  GAGGGGTACC AGAACAACCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ	WSB/EiJ
ss50450316	NES13440735	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ	WSB/EiJ
rs37435679					SNP	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50450316	NES13440735	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:66593202 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10160	CpG island 10160	742 bp distal
Cpgi10161	CpG island 10161	723 bp proximal
Pmaip1	phorbol-12-myristate-13-acetate-induced protein 1	within coordinates
Rr405709	regulatory region 405709	1411 bp downstream
Rr539737	regulatory region 539737	1528 bp distal
Rr539738	regulatory region 539738	1719 bp distal
Rr539739	regulatory region 539739	1665 bp distal
Rr539740	regulatory region 539740	152 bp distal
Tssr151705	transcription start site region 151705	1527 bp downstream