rs37436034 SNP Detail

Summary

• ID
  rs37436034
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135145585 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTCCGTTT TTGCAAAAAG
  GCGCCTGTGT CTGGCAGAGC CGGTGTGAGA AGAAGAGACA ACCCTTCCCC GCCGCCGGGA
  TAATCAAGAA TTTTGGCCGG ACCTTTGAGT ACACCTCGGG ATAGTGAGGA GCCCGGCGAA
  AAGCACAGAC TATGGCGCTG AAACGGATTA ATAAGGTGAG CAGTTTGGAC TAAATGGTGC
  S
  GACAGGGTTG TGGGAAGAAA GGAGGCTTGG GGCCCAGAGG AAAAAAAGCG TGGGTCTGGT
  GGTGGATACA ATTCTGAAAA TACCTTTTCT TGGGTTAAGG AAAGGCAGGT GCACTTTGAA
  ATGAGCTGTA AGATAGGGAA CTGAATGGTT TGGGTAAGCG AAATGTTAGC TTTTTTCACT
  AGAATCTGTA AGTATGGGTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51652685	NES14652409	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37436034					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51652685	NES14652409	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135145585 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930539J05Rik	RIKEN cDNA 4930539J05 gene			1159 bp upstream
Cpgi13855	CpG island 13855			172 bp distal
Rr367562	regulatory region 367562			1524 bp downstream
Rr367563	regulatory region 367563			1380 bp downstream
Rr398041	regulatory region 398041			351 bp upstream
Rr585708	regulatory region 585708			1784 bp distal
Rr585709	regulatory region 585709			1580 bp distal
Rr585710	regulatory region 585710			1249 bp distal
Rr585711	regulatory region 585711			603 bp distal
Rr585712	regulatory region 585712			458 bp distal
Rr585713	regulatory region 585713			within coordinates
Rr585714	regulatory region 585714			1044 bp proximal
Tssr1058	transcription start site region 1058			438 bp downstream
Tssr31809	transcription start site region 31809			1698 bp downstream
Tssr31810	transcription start site region 31810			1671 bp downstream
Tssr31811	transcription start site region 31811			1521 bp downstream
Tssr31812	transcription start site region 31812			1434 bp downstream
Tssr31813	transcription start site region 31813			1372 bp downstream
Tssr31814	transcription start site region 31814			1339 bp downstream
Tssr31815	transcription start site region 31815			1284 bp downstream
Tssr31816	transcription start site region 31816			1240 bp downstream
Tssr31817	transcription start site region 31817			1044 bp downstream
Tssr31818	transcription start site region 31818			771 bp downstream
Tssr31819	transcription start site region 31819			761 bp downstream
Tssr31820	transcription start site region 31820			726 bp downstream
Tssr31821	transcription start site region 31821			650 bp downstream
Tssr31822	transcription start site region 31822			384 bp downstream
Tssr31823	transcription start site region 31823			355 bp downstream
Tssr31824	transcription start site region 31824			324 bp downstream
Tssr35782	transcription start site region 35782			1818 bp upstream
Tssr35783	transcription start site region 35783			1186 bp upstream
Tssr35784	transcription start site region 35784			1119 bp upstream
Tssr35785	transcription start site region 35785			547 bp downstream
Ube2d3	ubiquitin-conjugating enzyme E2D 3			Intron
				Noncoding-Transcript-Variant