rs37440649 SNP Detail

Summary

• ID
  rs37440649
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84467778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAC GCCCCTCATG GTGGCGCGGC
  R
  CGGAACGGAC AGCGTCTGGG GTTGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51971729	NES14984961	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	A	G	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs37440649					SNP	A	G	G	A	G	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51971729	NES14984961	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84467778 () rs orientation: forward

Symbol	Name	Function Class
Adgre5	adhesion G protein-coupled receptor E5	within coordinates
Cpgi20655	CpG island 20655	within coordinates
Gm46046	predicted gene, 46046	137 bp upstream
Rr368559	regulatory region 368559	1011 bp downstream
Rr666301	regulatory region 666301	10 bp proximal
Rr666302	regulatory region 666302	167 bp proximal
Rr666303	regulatory region 666303	221 bp proximal
Rr666304	regulatory region 666304	1067 bp proximal
Tssr2618	transcription start site region 2618	1036 bp upstream
Tssr2619	transcription start site region 2619	748 bp downstream
Tssr2620	transcription start site region 2620	127 bp upstream
Tssr2621	transcription start site region 2621	1406 bp upstream
Tssr78291	transcription start site region 78291	793 bp downstream
Tssr78292	transcription start site region 78292	771 bp downstream
Tssr78293	transcription start site region 78293	630 bp downstream
Tssr78294	transcription start site region 78294	575 bp downstream
Tssr78295	transcription start site region 78295	529 bp downstream
Tssr78296	transcription start site region 78296	510 bp downstream
Tssr78297	transcription start site region 78297	239 bp upstream
Tssr82049	transcription start site region 82049	1079 bp upstream
Tssr82050	transcription start site region 82050	991 bp upstream
Tssr82051	transcription start site region 82051	717 bp upstream
Tssr82052	transcription start site region 82052	24 bp downstream