rs37445347 SNP Detail

Summary

• ID
  rs37445347
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:73967175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGCTTCCC ACCGGGAGAC
  TAACAACAGG AAGGACTGTT CACTGGCGCG GCCTCAGGCC CAGATTCTTA CACCATGTTC
  CCCACTCTCG GCTTACCTGT CAGCACTGAG GATGGGGCTG CTTGTGGAGA GGGGGCTCGG
  GGAGACAAAG GAGCCCCCTG GGGTCCCGTT CCTCAGGGGT GTCTCGTGCC CATAGGCGTG
  R
  GCAGCTGGTG CGCTGAAGCT CTTAGGCTCA ACGTCCTGAG CTCGAGGCCC TGCCACCGCT
  GTCCTCGCCA CGGACTCCAC ATAGCTCCGG GGCTCTAGAA GGAAAGAGAC AAAGAATGAG
  CATAGATGTG GTAGGAGTCC ACCCACCCTA CCAGGGACTA CAGCACACCC AGAGTCCAGC
  CTGAGAAAGA GACAGCATAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51276650	NES14517816	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37445347					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51276650	NES14517816	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:73967175 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr413030	regulatory region 413030			1444 bp distal
Rr413031	regulatory region 413031			1556 bp distal
Rr413032	regulatory region 413032			1207 bp distal
Rr413033	regulatory region 413033			253 bp proximal
Rr413034	regulatory region 413034			487 bp proximal
Rr413035	regulatory region 413035			1055 bp proximal
Rr413036	regulatory region 413036			1888 bp proximal
Tns1	tensin 1			Coding-Synonymous
				Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr117	transcription start site region 117			479 bp downstream
Tssr12216	transcription start site region 12216			488 bp downstream
Tssr12217	transcription start site region 12217			1301 bp downstream