rs37445967 SNP Detail

Summary

• ID
  rs37445967
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60215075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTCCATTC CCGCTTGCTA
  ACACAAAGCT TGCTGGCTCA GACGGTCCCT GAGGACTCTG AAACACCCTC CAGCCTGGGT
  GGACCCTGGC TTGATGCCTA CCTGTCCATT GCTGCCAGCA TCAGGGTCCC GGGCCTTGAC
  TGTGGCTACT CGCTGGCCCA CAGGACAGTC CTCAGGCACA CTGATGGCTG AGTCCGAGGT
  R
  AAGTCGAAGC GTGGGCTGTT ATCATTCTCA TCCAGAACGG TGATGTAGAC CTGGGGGCAG
  ACACACTCAG CCACCTCCTG CCTCCTTCTC CAAAATATCC TTAGGTCATG AGGTCAGCAG
  GGGCCTTGAG CAAACCTTCA AGTCCCAAGC TCCATCCCAC CTTCTCTGAG CAATATCCGT
  GTGTGTGTGT GTGTGTGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50866368	NES14170663	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37445967					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50866368	NES14170663	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60215075 () rs orientation: forward

Symbol	Name	Function Class
Cdh23	cadherin related 23 (otocadherin)	within coordinates
Rr368996	regulatory region 368996	1913 bp upstream
Rr432129	regulatory region 432129	772 bp proximal
Rr432130	regulatory region 432130	1720 bp proximal
Tssr93630	transcription start site region 93630	1291 bp upstream
Tssr93631	transcription start site region 93631	1350 bp upstream
Tssr97724	transcription start site region 97724	926 bp downstream