rs37446392 SNP Detail

Summary

• ID
  rs37446392
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5537138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAATCTCAA TCAATAAGAG
  CTGGATCCAG GGCTGTTCAA CCCCTCAAAC CAAGAAGTCT ACAATCAACG ACCCCTCCCC
  CCATTTAGCT TTCTACTTCC TTTCCCAATC CTCACTGGCA TGGAAGAGTC CTGGACTTGC
  TCAGGTGGCC CTTTGCTGGC TCCCTTCTTT CCAGATGGTG AGCTGGGGGC ATGGTCACCT
  R
  TAGAGATCAG AAGAGAGTTA GTCCTGCACA CAGTCTGGCT GCCCGGAGGA GCTTAGATGG
  AGTTGCTCAG TGTGTGAATT TGAGTGTCAT ATTTTAAAAC GTTTTTGTGT TTTCTTGTAT
  GTGTATGAGT GTTTCACCTG TGAGTATGTC TATGCATCAC TTGCATGCAA TACTAGAAGA
  GGTCAGAAGT AGGGGCTGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50578874	NES13652123	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37446392					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50578874	NES13652123	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5537138 () rs orientation: forward

Symbol	Name	Function Class
1700061A03Rik	RIKEN cDNA 1700061A03 gene	1634 bp downstream
Cpgi10453	CpG island 10453	554 bp proximal
Cpgi10454	CpG island 10454	1804 bp proximal
Mus81	MUS81 structure-specific endonuclease subunit	within coordinates
Rr363568	regulatory region 363568	within coordinates
Rr370432	regulatory region 370432	1138 bp upstream
Rr405805	regulatory region 405805	1889 bp upstream
Tssr157605	transcription start site region 157605	1161 bp downstream
Tssr157606	transcription start site region 157606	1831 bp downstream
Tssr157607	transcription start site region 157607	1850 bp downstream
Tssr157608	transcription start site region 157608	1936 bp downstream
Tssr157609	transcription start site region 157609	1967 bp downstream