rs37447896 SNP Detail

Summary

• ID
  rs37447896
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:45502811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTAGTTT ATTATTTTCC
  TGAGTCAGGT GTTTCCCTGG AAACACACAG CAAAGCCGCT AGTTTATCAT CTCTTATCTC
  CTCCTTCTTG CCATATCCCA TCTAGTTTGA GCATCATGAT TTTCTCATTT GTGATCATTA
  GCCGAGAGTG AGGTAAAGAC AGCGTGTCCG TATATTGTAC CATGTGCTTA TCTGGGTTGC
  Y
  GTCTCAGCCA AGTCTGTCAA TTTTAATTAT CGCTGTTTTC TTTTTCTTTC TACTCTGCCA
  CCAAAAGAAT CTTTGGCTGC TCCTGACCTC AGCAAACCAA GAGGTGACTT ATGCATGCCA
  GCTGTCCATT AATAATCACT GGAAGTCATT GGGAAAGCTC GACCCAATGA TGACAGGCTT
  CTCCGGGTGC TTGATGCTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51951765	NES14977148	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37447896					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51951765	NES14977148	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:45502811 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20295	CpG island 20295	1289 bp proximal
Fat1	FAT atypical cadherin 1	within coordinates
Tssr77124	transcription start site region 77124	1146 bp upstream
Tssr77125	transcription start site region 77125	1726 bp upstream
Tssr77126	transcription start site region 77126	1782 bp upstream