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rs37449566 SNP Detail
Summary
  • ID
    rs37449566
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr6:72575116 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTTGAGAGCC TGATAGAGTA
    GTTACGATTA GGGGAATCCA CCTAGGGATA ACGTCGGTGT GAGGCTGCCA GTCCTGGGCT
    GACACAGGTT TAGGAGAGCT CCTGTGCAGG TCTCAACAAG GTCTCAACTC AGATACCCAG
    ACAGAGGCTG TGTGGGCACA GAAACTTTGT CACTGCTTGG AAGAGGAGAG GGGAGGAAAG
    M
    AATGAACTGC CTCCGAGGTT CCAGCGAATC CAACACGGAA AAGGCACCAG AACCCAGGTC
    TTCTCTGCCT CCCAGACAGG ATCTCTCTCA GACCTGCAAC TTTCATCCTT GTTGTGGTCC
    CGCGGTGACC ATTTCCACCA GACATCGTCC TCCTCACCCT CACCTCCCTC ACCAGACCCC
    TTGCTCACCG GACGCGTCCC                                            
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss51695544 NES14820318 PERLEGEN MM_PANEL2 f SNP C C C C C C C C C A A A C C C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs37449566 SNP C C C C C C C C C A A A C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss51695544 NES14820318 PERLEGEN MM_PANEL f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:72575116 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi17548 CpG island 17548 within coordinates
Elmod3 ELMO/CED-12 domain containing 3 Intron
mRNA-UTR
Retsat retinol saturase (all trans retinol 13,14 reductase) 469 bp upstream
Rr399707 regulatory region 399707 196 bp upstream
Rr632239 regulatory region 632239 within coordinates
Rr632240 regulatory region 632240 199 bp proximal
Tssr57150 transcription start site region 57150 461 bp upstream
Tssr61470 transcription start site region 61470 197 bp downstream
Tssr61471 transcription start site region 61471 248 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory