rs37449979 SNP Detail

Summary

• ID
  rs37449979
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40711961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCCAGCGAG ATAGCGCGGC GGCTTAGCCT CCCACAAGCT
  GGCAGCACGA AACAAGAAGC CTAGCAGTGC TCCTTAGTCT CAGGCTGGGG TGGACCAAGC
  Y
  CGAGGCCGGG AAACCGCCGG GCTCAGGGAG AAGGACCGAG GGTCGTGTGG GGGAGGGGCG
  CAACAACCTT CGCAGCCATT TTGTCCTCGC CCCACTTCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ
ss52005330	NES15018992	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ
rs37449979					SNP	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52005330	NES15018992	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40711961 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21602	CpG island 21602	509 bp distal
Cpgi21603	CpG island 21603	within coordinates
Gm57042	predicted gene, 57042	within coordinates
Hspa8	heat shock protein 8	611 bp upstream
Rr206240	regulatory region 206240	within coordinates
Rr383256	regulatory region 383256	within coordinates
Tssr84479	transcription start site region 84479	1299 bp downstream
Tssr84480	transcription start site region 84480	559 bp downstream
Tssr84481	transcription start site region 84481	601 bp upstream
Tssr84482	transcription start site region 84482	1240 bp upstream
Tssr84483	transcription start site region 84483	1701 bp upstream
Tssr84484	transcription start site region 84484	1960 bp upstream
Tssr88972	transcription start site region 88972	97 bp downstream