rs37450579 SNP Detail

Summary

• ID
  rs37450579
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:84394164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCAAAGCTA GTTGTGGTGT GAGCCTTTAA TCCCAAGACA
  CAGGAGGCAT AGGCAGGTGG ATCTTTTGAA TTTAAGGTTA GCCTGGCCAG TTCCAGGGCA
  R
  GCCAAGGAGA CTTCTGAAAA CGGAGAGATG GGCAGGCAGA CACGAAAGTG GAAATTGGGA
  TCAGAAATGG GCAAGGGTCT ATCCCATGGG ATCATGGACC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss51971824	NES14985933	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs37450579					SNP	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51971824	NES14985933	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84394164 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pkn1	protein kinase N1			mRNA-UTR
				Noncoding-Transcript-Variant
Ptger1	prostaglandin E receptor 1 (subtype EP1)			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr666279	regulatory region 666279			847 bp distal
Rr666280	regulatory region 666280			100 bp distal
Rr666281	regulatory region 666281			318 bp proximal
Rr666282	regulatory region 666282			572 bp proximal
Rr666283	regulatory region 666283			1346 bp proximal
Tssr78279	transcription start site region 78279			876 bp downstream
Tssr78280	transcription start site region 78280			818 bp downstream
Tssr78281	transcription start site region 78281			653 bp downstream