rs37455053 SNP Detail

Summary

• ID
  rs37455053
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:187995702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCTCTCC TCTCTATACT
  GCCCTCCTAG AAGGCCTCCG GAGCTGCATC CCTGCAGACG ACGGTGATCT CCACCCTTAC
  TCCAGGAGCA GCTCCGTGAG CTTCATGTTC GGAAGTCACC AGAACTGCCC GTCTCTACGG
  GCTCCGAGGC TGGCAGCCGA ATTGACCTTA GCTGTGTGGT TGAAGCTTGA GCAAGGAGGC
  R
  CTATGTGAGT AACACCAGCT GTTTCTAGTT TTCATTTGAC CTAGAACCCC CGTGAAATGG
  GAAGTTGTGG AAACTATTGC AATCTGAGGT CTCACCTAGA AATTAAGGTA ACAGTACAGC
  TGTTACAGCT GTGGGGGCTA CCGTTGAAGA CCAGCTGCTG TGTTAGTCTT CCCTTTTCTG
  GCTCTACAAT GTGAGTATTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51416320	NES14451701	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37455053					SNP	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51416320	NES14451701	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:187995702 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1191	CpG island 1191	39 bp distal
Tssr368	transcription start site region 368	602 bp downstream
Tssr10680	transcription start site region 10680	1513 bp downstream
Tssr10681	transcription start site region 10681	1477 bp downstream
Ush2a	usherin	within coordinates