rs37456807 SNP Detail

Summary

• ID
  rs37456807
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:38220599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCAC TCACGGAGCA CGCATACACA
  M
  GCGCGCGCTA GATAATACTT AACAT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51098401	NES14356859	PERLEGEN	MM_PANEL2	f	SNP			A	C	A	A	A		C	A	C	C		A
ss148892343	ENSMUSSNP1093047	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C			A
ss324319571	CHEV_13_38128492	CHEVERUD	SCREENING_POP	f	SNP								A					C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37456807					SNP	C	C	A	C	A	A	A	A	C	A	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51098401	NES14356859	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:38220599 () rs orientation: forward

Symbol	Name	Function Class
Cage1	cancer antigen 1	within coordinates
Cpgi5461	CpG island 5461	within coordinates
Riok1	RIO kinase 1	372 bp upstream
Rr281252	regulatory region 281252	within coordinates
Rr369679	regulatory region 369679	723 bp upstream
Tssr119342	transcription start site region 119342	612 bp upstream
Tssr122123	transcription start site region 122123	267 bp downstream
Tssr122124	transcription start site region 122124	302 bp downstream
Tssr122125	transcription start site region 122125	460 bp downstream
Tssr122126	transcription start site region 122126	542 bp downstream
Tssr122127	transcription start site region 122127	1296 bp downstream
Tssr122128	transcription start site region 122128	1318 bp downstream
Tssr122129	transcription start site region 122129	1348 bp downstream