rs37456857 SNP Detail

Summary

• ID
  rs37456857
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37464704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGTC TGCACTAAGT GTTTTCTTTT
  W
  AAAATTTTTA GCAAGAACAC TGTAT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50673625	NES14003077	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs37456857					SNP	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50673625	NES14003077	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37464704 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21585	CpG island 21585	519 bp distal
Nrgn	neurogranin	663 bp upstream
Rr676716	regulatory region 676716	515 bp distal
Rr676717	regulatory region 676717	59 bp distal
Rr676718	regulatory region 676718	780 bp proximal
Rr676719	regulatory region 676719	1749 bp proximal
Tssr88858	transcription start site region 88858	697 bp upstream
Tssr88859	transcription start site region 88859	667 bp upstream
Tssr88860	transcription start site region 88860	426 bp upstream
Tssr88861	transcription start site region 88861	11 bp upstream