rs37460650 SNP Detail

Summary

• ID
  rs37460650
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37166958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGCAGGC CCATGGCCAG
  AGCCTCCGCC CCTTGAACAT GACCGGCCTG CCCTCTAGGT CGCGCCGAGT GCAAGTCCTA
  GCTATCCCTC TGTGCTCACT AGCCACTGTT TTCTATGTAC TGCCATCTGT TTTCTCGAAC
  TTTCTCTCCT AGTCAGAAAC CAGCAGTCTT GAGTTTCCTG GGGCTCCTCT TTCTTGTCTG
  K
  GCTTTTCCAT TTCACTACCC ACGAGGGGAT GGGGAACTGA AAACAGCAGT CCTACAAGTC
  ATCAACTCTG TGTGACGTTG GGTTTCCTGC AGTGCTACCT GTCTTGAGCA GTTCTGTGCC
  CTGACACAAA GCAAATCCGG TGCTCTGTGT AAGTGAACGC AGTGGGACCA CCGCGCTGAC
  TCATGATCTG CGGGCTCTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50674831	NES14008190	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G		G	G	T		G
ss322906506	CHEV_9_37063247	CHEVERUD	SCREENING_POP	f	SNP											T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37460650					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50674831	NES14008190	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37166958 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21569	CpG island 21569	75 bp distal
Gm48081	predicted gene, 48081	within coordinates
Rr676656	regulatory region 676656	259 bp distal
Rr676657	regulatory region 676657	154 bp distal
Rr676658	regulatory region 676658	within coordinates
Rr676659	regulatory region 676659	66 bp proximal
Rr676660	regulatory region 676660	374 bp proximal
Slc37a2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	249 bp upstream
Tssr88821	transcription start site region 88821	298 bp upstream
Tssr88822	transcription start site region 88822	270 bp upstream
Tssr88823	transcription start site region 88823	243 bp upstream
Tssr88824	transcription start site region 88824	220 bp upstream
Tssr88825	transcription start site region 88825	201 bp upstream
Tssr88826	transcription start site region 88826	109 bp upstream
Tssr88827	transcription start site region 88827	27 bp upstream
Tssr88828	transcription start site region 88828	within coordinates
Tssr88829	transcription start site region 88829	7 bp downstream
Tssr88830	transcription start site region 88830	23 bp downstream
Tssr88831	transcription start site region 88831	68 bp downstream