rs37466801 SNP Detail

Summary

• ID
  rs37466801
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48529690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGA CAGCTCTGAA CATAGGAAAA
  W
  TGAGGTATTT TTTTAGTAGC CCCAA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51307151	NES13774521	PERLEGEN	MM_PANEL2	f	SNP	T	A	A	A	T	A	A	A	T		A	A	T	A		T
ss321793651	CHEV_6_48502755	CHEVERUD	SCREENING_POP	f	SNP										T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37466801					SNP	T	A	A	A	T	A	A	A	T	T	A	A	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51307151	NES13774521	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48529690 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17370	CpG island 17370	1701 bp proximal
Gm67220	predicted gene, 67220	within coordinates
Gm67227	predicted gene, 67227	1248 bp downstream
Rr399635	regulatory region 399635	1762 bp upstream
Rr629686	regulatory region 629686	195 bp proximal
Rr629687	regulatory region 629687	880 bp proximal
Tssr60734	transcription start site region 60734	1901 bp downstream
Tssr60735	transcription start site region 60735	1918 bp downstream
Tssr60736	transcription start site region 60736	1961 bp downstream