rs37467319 SNP Detail

Summary

• ID
  rs37467319
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:101074465 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATGGCATT AGAATAGGAC
  CACTGGTACT AGTGGGTATG GACACAAGCT GAGTTCTAGA GCAAGATCTT CAATGTTCAC
  TGCATTTGTG CTGACAGATG AACACATTTA GAACAAACAC TGCCAAAGTT AACTGAATGG
  GCAAACACTT GACAACCTAC TGTTCTCGTT TCTGTGTGTA TACTTCTTCA TACAAAGCAA
  R
  TGACTAATAA GACAGTATTT ATTAATTCAT TGGTTAATAA GGAAAAATAA TATAAAAAGA
  ATGCATTTAT TCTGAACTTT CAGCTCTATT AATATGCTTG CAGTTGTGTT AATAGAAGAC
  ACATAATTTA AACCTTAAAG TAGTATAATA AAACTGATTT TATAAACATA GATTTTAAAA
  AATTGTAATT TTTTTTTTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
ss50785747	NES14211519	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A		G		A
ss323148484	CHEV_9_101099596	CHEVERUD	SCREENING_POP	f	SNP										G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
rs37467319					SNP	A	A	A	A	A	A	G	A	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50785747	NES14211519	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:101074465 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm67595	predicted gene, 67595			within coordinates
Ppp2r3a	protein phosphatase 2, regulatory subunit B'', alpha			Intron
				Noncoding-Transcript-Variant
Rr685595	regulatory region 685595			1797 bp proximal
Tssr91107	transcription start site region 91107			1674 bp downstream
Tssr91108	transcription start site region 91108			1710 bp downstream
Tssr91109	transcription start site region 91109			1733 bp downstream
Tssr91110	transcription start site region 91110			1815 bp downstream