rs37468189 SNP Detail

Summary

• ID
  rs37468189
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:55241028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTAACAAT TGTTGATGTC
  TCCGGAGGGA GGAAGGACTT CCGGGTTGTG ACACTCTTAG GGTCTGGAAA GCATCCTAAA
  GGCAGGGTAT GTGGTGACAT TAGGAGCATC TCCTATAAGG GGAGTAGTAT GCCTAACCCA
  CTAGTATAGC TAGTGGTAGA GCTATAGTTG ACCTAGTCTG TCTCTACGGT CTGCTCCATC
  R
  TATAGAAATC TTGGGCGATG TCAGAATCCT CCCCATGTGG GAAACATTTA GAGTGTCATT
  ACCATGCGGT GGAACTGGAT GGAAAGACAA GACAACAAGA TCTTAGAATG ACCCAGCCCT
  TGCTGAAACG GACACTTAAT TCTAGAGATC CATGACGTCA AAAACAACAA TTAGACTAGT
  TGGTGTGCTC CTGCTATGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51221526	NES14297446	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs37468189					SNP	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51221526	NES14297446	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:55241028 () rs orientation: forward

Symbol	Name	Function Class
Acsl5	acyl-CoA synthetase long-chain family member 5	within coordinates
Cpgi11077	CpG island 11077	1419 bp proximal
Rr363563	regulatory region 363563	within coordinates
Rr363564	regulatory region 363564	372 bp proximal
Rr370538	regulatory region 370538	1288 bp upstream
Tssr5558	transcription start site region 5558	753 bp downstream
Tssr157068	transcription start site region 157068	693 bp downstream
Tssr157069	transcription start site region 157069	652 bp downstream
Tssr157070	transcription start site region 157070	633 bp downstream
Tssr157071	transcription start site region 157071	1045 bp upstream
Tssr157072	transcription start site region 157072	1097 bp upstream
Tssr157073	transcription start site region 157073	1304 bp upstream
Tssr157074	transcription start site region 157074	1370 bp upstream
Tssr157075	transcription start site region 157075	1385 bp upstream