rs37468719 SNP Detail

Summary

• ID
  rs37468719
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:66683353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGTGTCTG TTCCACAAAT
  TATCACTACA CTTCTAGAGT ATGCTAAGTA TCATGAATAA CATCCAGTAA CTGGAAAATA
  TATTCTATCA GAAGTTGCCA GAACTCCCAT TCCTCCCACT GCCACACAGC TCAGTTGAAT
  AGTCTTGCAA CTCAGCATCT TCTAGCAACC CTTAAAAGGC AACAAGACCT TTGTCCGTCG
  K
  CCTTTGTACT CACCAAGACT CTTTCTTTCC CTGTGAAGGC CCTTAGAGCT CCAAGCTGCT
  CATATCTCCC AACCAGCTAG ATGACTCAAA TAAGTCAGTT AAACTTTCTG AGCCTCCCTT
  TCTACTAGTC AAAAGCAAAG AACAACTTGT AGACTTACAG TGATGTTCTC AAGATTGACT
  GAAAGTCACT TAGTAGTATG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51709122	NES14574197	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	G	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37468719					SNP	T	T	T	T	T	T	T	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51709122	NES14574197	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:66683353 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr503566	regulatory region 503566			1107 bp distal
Rr503567	regulatory region 503567			530 bp distal
Rr503568	regulatory region 503568			within coordinates
Rr503569	regulatory region 503569			401 bp proximal
Rr503570	regulatory region 503570			1079 bp proximal
Sla	src-like adaptor			Intron
Tg	thyroglobulin			Intron
				Noncoding-Transcript-Variant
Tssr131484	transcription start site region 131484			730 bp upstream
Tssr131485	transcription start site region 131485			856 bp upstream
Tssr134583	transcription start site region 134583			1361 bp upstream
Tssr134584	transcription start site region 134584			877 bp upstream
Tssr134585	transcription start site region 134585			554 bp downstream
Tssr134586	transcription start site region 134586			608 bp downstream
Tssr134587	transcription start site region 134587			683 bp downstream
Tssr134588	transcription start site region 134588			1133 bp downstream
Tssr134589	transcription start site region 134589			1155 bp downstream
Tssr134590	transcription start site region 134590			1181 bp downstream
Tssr134591	transcription start site region 134591			1212 bp downstream
Tssr134592	transcription start site region 134592			1693 bp downstream