rs37472018 SNP Detail

Summary

• ID
  rs37472018
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:97874913 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCATCTGGA CGTTAGCGGT
  GTTGGGAGCC AGGTTGCCAT CGCCATAGCT GAACTGTGGG GCAGAGGGGC GAGGGTTGTG
  AGACCAGGGG CCTAGCATCT GCTGGGATCA GAGGCTAACA GTACATTCAT CTGATAGGGG
  CTCAGAGCAT CAGATGGGCC CTGGGGCAGG TGTGGAGCAA GCTCAGAGGA CATCTTCTCT
  Y
  GCTCTAATGG GGAAAATACT TTCTCCTCTT TCTTTCTTCT AAGGCCCAAA GGGACACCGG
  CGGAGGATGC CAAGAAGGAG CTAAAGAATC GGAGGAGAGA GAAGAGCACT CAGGAGGGAC
  CAGCTGAGCC TAGACCACCG GGCACTCACG TGGAAGCCAC CGTTCATGGT CTCTCCAAAC
  CAGATGTGTT TCTTTTCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51763542	NES14551345	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37472018					SNP	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51763542	NES14551345	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:97874913 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Col2a1	collagen, type II, alpha 1			Intron
				Noncoding-Transcript-Variant
Rr509000	regulatory region 509000			200 bp distal
Tssr4707	transcription start site region 4707			137 bp upstream
Tssr132910	transcription start site region 132910			1402 bp downstream
Tssr136189	transcription start site region 136189			1345 bp upstream
Tssr136190	transcription start site region 136190			1315 bp upstream
Tssr136191	transcription start site region 136191			1111 bp upstream
Tssr136192	transcription start site region 136192			981 bp upstream
Tssr136193	transcription start site region 136193			964 bp upstream
Tssr136194	transcription start site region 136194			913 bp upstream
Tssr136195	transcription start site region 136195			890 bp upstream
Tssr136196	transcription start site region 136196			878 bp upstream
Tssr136197	transcription start site region 136197			860 bp upstream
Tssr136198	transcription start site region 136198			336 bp upstream
Tssr136199	transcription start site region 136199			297 bp upstream
Tssr136200	transcription start site region 136200			272 bp upstream
Tssr136201	transcription start site region 136201			216 bp upstream
Tssr136202	transcription start site region 136202			154 bp upstream
Tssr136203	transcription start site region 136203			245 bp downstream
Tssr136204	transcription start site region 136204			338 bp downstream
Tssr136205	transcription start site region 136205			801 bp downstream
Tssr136206	transcription start site region 136206			840 bp downstream
Tssr136207	transcription start site region 136207			870 bp downstream