rs37472614 SNP Detail

Summary

• ID
  rs37472614
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5900669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAATCTGCCC TGAGATTTAC TCTTCCCTCG GGTCCAGGCT
  GCTCTGGTTT GCAAGGCTCC ATCCAGGTCA AACTCAGGCT TTCCTCATGG CCTCTCGGTT
  Y
  CAGTTACCTT AAAGCTATCA CCCCAGAACT CAGGAGGCTG ACAGAACCAA GGGTTTAAGG
  CGAGTATTGG TAACTTATCG AGACCCCCAT CTCAAAAGTA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50577054	NES13648098	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37472614					SNP	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50577054	NES13648098	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5900669 () rs orientation: forward

Symbol	Name	Function Class
Frmd8	FERM domain containing 8	333 bp downstream
Frmd8os	FERM domain containing 8, opposite strand	within coordinates
Gm59610	predicted gene, 59610	1398 bp upstream
Rr370436	regulatory region 370436	within coordinates
Tssr154521	transcription start site region 154521	1973 bp downstream
Tssr157784	transcription start site region 157784	680 bp upstream
Tssr157785	transcription start site region 157785	627 bp upstream