rs37473054 SNP Detail

Summary

• ID
  rs37473054
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:20987339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGT TCCTGCTGAA TCCGTCTTAC
  Y
  GGGAGATTGG TGACTAGAAG AAAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	DBA/2J	FVB/NJ	LG/J	PWD/PhJ	SM/J	WSB/EiJ
ss51232303	NES14289222	PERLEGEN	MM_PANEL2	f	SNP		C		C		C		T
ss148726353	ENSMUSSNP1384623	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss319654642	CHEV_1_20907196	CHEVERUD	SCREENING_POP	f	SNP					T		C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	DBA/2J	FVB/NJ	LG/J	PWD/PhJ	SM/J	WSB/EiJ
rs37473054					SNP	C	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51232303	NES14289222	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:20987339 () rs orientation: forward

Symbol	Name	Function Class
Gm24171	predicted gene, 24171	1575 bp upstream
Paqr8	progestin and adipoQ receptor family member VIII	within coordinates
Tssr6058	transcription start site region 6058	725 bp upstream
Tssr6059	transcription start site region 6059	741 bp upstream