rs37474770 SNP Detail

Summary

• ID
  rs37474770
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:95901003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGGTTAT GGACACAGCA
  GCCTCGGATC CCATAACATG TGGGAGACAG TGAAGCACTG TGCTGTGATC CCAACACCTG
  GCCTCACCCA AACTGTGCAT GCTGGGCATT TCTGTTCTGC TGTGGCTTTC AACAACTTTG
  AAAAGCTCAA TAAACTCCTA ATAAGTAAGG AGGAATGACT GGATGACTAT TAGGCACATA
  M
  ATACAGAATA TGTGAGAAAA ATTAAAATAT AAGTAAAAAT ATAAGTAAGA AAAATGTAAG
  TAAAAAAACT CTTGTTTTTA GAGCAATAAT TATAATTCAA TGCTTAGCTT GGGCTGATTC
  CTGGAGCATT TCAAAGTATG CACATATACA CATATAAATA TTTAAGATAT ATATGCATAC
  ATGTACATAA TTACAGATAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss51137175	NES14339042	PERLEGEN	MM_PANEL2	f	SNP			A	C		A	A	A	A	A
ss144993720	ENSMUSSNP3299964	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C			A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs37474770					SNP	C	C	A	C	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51137175	NES14339042	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:95901003 () rs orientation: forward

Symbol	Name	Function Class
Gm32702	predicted gene, 32702	593 bp upstream
Iqgap2	IQ motif containing GTPase activating protein 2	within coordinates
Rr484141	regulatory region 484141	136 bp distal
Rr484142	regulatory region 484142	191 bp proximal
Rr484143	regulatory region 484143	607 bp proximal
Tssr120725	transcription start site region 120725	626 bp upstream
Tssr120726	transcription start site region 120726	830 bp upstream