rs37474997 SNP Detail

Summary

• ID
  rs37474997
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:145070038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGGGAATG CCAAGCCACC
  GACAGCCCAT CAGGATGGGG ACACCACTTT GGAATATCTC AGCAATCTTG GAGGGGCAAA
  GAAAACAAAT GTGTACAATG ACAACCTGTG TCAGAGCCCA GCAGATTGGC AGCTCAAGGT
  CAACAGAGTC CTGCCCCATT TAATCTCAGT CTCCAGAGCA GCTTCCCATG GAACCCTGAG
  Y
  CTGATTTTTC TCGAGTAACC ACATGGTGGG TTCCCAGAGC AGAGCAGGGT GAGCCATGGT
  GTTGCAATTC CCACACATCT CAGCTTTGAG TAGGGAAGAA GAGACTTAAG AAGCTAAGCC
  ATCGGGCTGG AAAGGTGGCT CAGCGGTTAA GAGCACTGGC TGCTCTTTCA AAGGTCCTGA
  GTTCAATTCC CAGCAACCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51533889	NES14867129	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37474997					SNP	T	T	T	T	T	T	C	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51533889	NES14867129	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:145070038 () rs orientation: forward

Symbol	Name	Function Class
Pdap1	PDGFA associated protein 1	within coordinates
Rr624550	regulatory region 624550	193 bp proximal
Rr624551	regulatory region 624551	231 bp proximal
Tssr49741	transcription start site region 49741	1748 bp downstream
Tssr49742	transcription start site region 49742	1895 bp upstream
Tssr54419	transcription start site region 54419	340 bp upstream
Tssr54420	transcription start site region 54420	259 bp upstream
Tssr54421	transcription start site region 54421	1904 bp downstream