rs37475208 SNP Detail

Summary

• ID
  rs37475208
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:9963335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCAATGCC TGAAGTGAGG
  TGGGAAGAGC TCAGGTAAAG ACAAGTGTTC ATTTGCCATC TAACAAATAG TGAGGCTGGC
  CCTTGAGCTA CACTAGCTAG AGTCTCAGTT CTGTCTCAAG GCTACCTGCA AGAGGCTAGC
  CAACCATCCC TGCAAGAACC ACCTCATTAC TTCCCAAGAG ACATCATTTC AGCATTCTGT
  Y
  AGTATTGCAC TTGCTAGAAG TTTGTTGCTC ATATCAAGCC CTTAGGTGGA GTGAACAAAA
  GGCCTCTATC ACAGGGTTCT TTCCTAGGTA GTTGGCATTA ACCCTCAGCT AGTGTAGGAA
  CACAAGTTTC CCCCACAGGT CAGTAGTAAT GAACTGGGGA TTTGTTGGGT AGACTCAGAA
  CTGAAATGGC AGGCACAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50605172	NES13645698	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37475208					SNP	T	T	T	T	T	T	C	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50605172	NES13645698	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:9963335 () rs orientation: forward

Symbol	Name	Function Class
Best1	bestrophin 1	Intron
Fth1	ferritin heavy polypeptide 1	873 bp downstream
Rr543966	regulatory region 543966	1969 bp distal
Rr543967	regulatory region 543967	1389 bp distal
Rr543968	regulatory region 543968	1326 bp proximal
Tssr155006	transcription start site region 155006	1752 bp downstream
Tssr155007	transcription start site region 155007	1679 bp downstream
Tssr155008	transcription start site region 155008	1388 bp downstream
Tssr155009	transcription start site region 155009	1042 bp downstream
Tssr155010	transcription start site region 155010	854 bp downstream
Tssr158137	transcription start site region 158137	1734 bp upstream
Tssr158138	transcription start site region 158138	1645 bp upstream
Tssr158139	transcription start site region 158139	1352 bp upstream
Tssr158140	transcription start site region 158140	1131 bp upstream
Tssr158141	transcription start site region 158141	1103 bp upstream
Tssr158142	transcription start site region 158142	1078 bp upstream
Tssr158143	transcription start site region 158143	1012 bp upstream
Tssr158144	transcription start site region 158144	874 bp upstream