rs37477839 SNP Detail

Summary

• ID
  rs37477839
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68599666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCACAGATG ACATGGTGAA
  GACGGTGAGT TTCTCCTGTC CTTCTGGCTT CAAAGTTCCG CTGTTGACAT GACTTCTAAC
  CTATCTGGTA TCTGCTGGGA AGTTTATGGT ATCTGGCAGG AACCGTAGAG GGTTTCAAGA
  CTTCTAAATA TAATCTAAAG GAAACTGTGT CTCTAGAGAA AGGAAGAATG GTAATAAATT
  S
  TAACGGCATC GGTTTAGGCT GTGTCTACAC AGAGGAAAGT GGGGACTTGC AATGTCCCTC
  CCAGCCTGCC TGCCTGTGTG ACACAGTGTC AGGTGCTCCC TGCTTCTGCT TCAGGGCAGG
  TGGAACAGGG AGACAGTCTC TAGGTACACT CTCTGTGCTT CACAAGCCAT AGAGATGAAT
  TAGATTGTCT CTCCCCCTGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51541955	NES14683682	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37477839					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51541955	NES14683682	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68599666 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13252	CpG island 13252	883 bp distal
Gm66274	predicted gene, 66274	1464 bp upstream
Il12a	interleukin 12a	within coordinates
Rr578059	regulatory region 578059	971 bp distal
Rr578060	regulatory region 578060	232 bp proximal
Tssr29479	transcription start site region 29479	970 bp downstream
Tssr29480	transcription start site region 29480	963 bp downstream
Tssr29481	transcription start site region 29481	922 bp downstream
Tssr29482	transcription start site region 29482	895 bp downstream
Tssr29483	transcription start site region 29483	822 bp downstream
Tssr29484	transcription start site region 29484	683 bp downstream
Tssr29485	transcription start site region 29485	398 bp downstream
Tssr29486	transcription start site region 29486	376 bp downstream
Tssr29487	transcription start site region 29487	264 bp downstream
Tssr29488	transcription start site region 29488	246 bp downstream
Tssr29489	transcription start site region 29489	1360 bp upstream
Tssr29490	transcription start site region 29490	1406 bp upstream
Tssr29491	transcription start site region 29491	1697 bp upstream
Tssr29492	transcription start site region 29492	1745 bp upstream
Tssr29493	transcription start site region 29493	1762 bp upstream
Tssr33509	transcription start site region 33509	120 bp upstream