rs37478354 SNP Detail

Summary

• ID
  rs37478354
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:149149940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTTATCTC CGTTGCAACT
  GGAATGTTCT AATTATATTT GTACTAATTC AAAAGATTTT TTTGAATTTG TAATTTCATG
  ACATTTTGAT GTGATTTAAA GTTAAAATGA CTATGGAATG ATTAAAATAT TATTACAAGT
  CACTTCAAGG AAACACAGTT GAAGTATTAC AAGCTAAGGG ATTGCTTTCA GAAATAAGAC
  R
  TATATTGTAC AATCTATTAA CCACTTCCAC ACATTTTTAA ACCGAATATA ACCATTTGAC
  TATTGAAATC ATTCTTAAAT AACGATCTCC ACTGTGCTAT ATACATGGCA GGGTTTAAAG
  AGCCCCTTTA CAGTAAAGTT TTCTAAAATA CGATTTAAAT TTAAAAACAA TACCTACCAG
  CACGTCTAAC AACAGTAACG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51052138	NES13892900	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	A	G	A	G	G	G		G	G	A		G
ss136071437	ENSMUSSNP2781203	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G						G
ss321018998	CHEV_3_149107267	CHEVERUD	SCREENING_POP	f	SNP											G				A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs37478354					SNP	A	G	G	G	A	G	A	G	G	G	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51052138	NES13892900	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:149149940 () rs orientation: forward

Symbol	Name	Function Class
A630039O03Rik	RIKEN cDNA A630039O03 gene	within coordinates
Gm30382	predicted gene, 30382	within coordinates
Rr398127	regulatory region 398127	1220 bp upstream
Rr587324	regulatory region 587324	480 bp proximal
Rr587325	regulatory region 587325	879 bp proximal
Tssr36100	transcription start site region 36100	883 bp downstream
Tssr36101	transcription start site region 36101	950 bp downstream
Tssr36102	transcription start site region 36102	964 bp downstream
Tssr36103	transcription start site region 36103	1048 bp downstream
Tssr36104	transcription start site region 36104	1073 bp downstream
Tssr36105	transcription start site region 36105	1150 bp downstream