rs37479901 SNP Detail

Summary

• ID
  rs37479901
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:8544523 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTGCGGC CCGCCAAGGG
  TGCTGCCTCA GCGGCTCTGT GCTTCTGCCT GTCCCAGAAG CTGTCCGGTT CTCTGGCGCA
  CCCTCTCACC AGTTCAGACT AATTTCCTAA GTTCTGCTGA GTCCTGGAAC CAAGATGGCG
  ACCGCTGCTG CTGAGGCTGA GCTGAAAATT CTTTAAAGAA AAGTTTGCAT AGGTCTTGAA
  W
  AAGAGCTAAT AGAGTATTAG CAACAAGAAT TCTGTTGAAG GTTTTTTTTT CCTGTTACAA
  AGGCAAAGCT AACACCAGTG AAATAGGAAA TTTACTATTT TCCTACTTAT TTATTTGTTT
  GTTTATTTAT TTATATTTTA TTGGATGTTT TATTTGTTTA CATTTCAAAT GTTATCCTCT
  CTCCTGATTT ACCCCCCAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss51549930	NES14866496	PERLEGEN	MM_PANEL2	f	SNP	T	A	A	A	A	A	T	A	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs37479901					SNP	T	A	A	A	A	A	T	A	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51549930	NES14866496	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8544523 () rs orientation: forward

Symbol	Name	Function Class
Glcci1	glucocorticoid induced transcript 1	within coordinates
Gm45062	predicted gene 45062	within coordinates
Tssr54920	transcription start site region 54920	50 bp upstream
Tssr54921	transcription start site region 54921	802 bp upstream