rs37481256 SNP Detail

Summary

• ID
  rs37481256
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113417625 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAACATGGA GTTTTCTATC
  AATTTCCAGA CAAATTCTTC ACATTTTCTG GCTTCTGAAA TCCTTCCTTC CACAAGTGTT
  CTACAACTAT GCACCAAACA ACCAAAACCA ATAACACTGA GTCCTGGGGG AATCCAGGAG
  GCATTTTGGA GATAGTCGTA GTTATCTAAT CCCCACTGGG GTTCAGTTTG GGAGTATGTT
  Y
  GCTGACATCA ACTTGTATAC GGCTCACAAA TGATGTTAGA GCTGTGAGAT AGTTCCTTCA
  CGATGCATCC TTGGCTCCTC CTTACATTGA GACCGCCCCA GGAGCTGAGC AAGCTGAAAG
  ATCATAGAAC TTCATGTAAT TTTTGTGAGG TGAGTCCTTT TGGGGTGCTG CATAGACTCT
  GAAGGTGAGC AGGCCCAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51841499	NES14768261	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37481256					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51841499	NES14768261	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113417625 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17844	CpG island 17844	1718 bp proximal
Gm43928	predicted gene, 43928	within coordinates
Jagn1	jagunal homolog 1	1905 bp upstream
Rr132170	regulatory region 132170	376 bp proximal
Rr145547	regulatory region 145547	1375 bp proximal
Rr146999	regulatory region 146999	626 bp distal
Rr399832	regulatory region 399832	1680 bp upstream
Tssr58212	transcription start site region 58212	1907 bp upstream
Tssr58213	transcription start site region 58213	1964 bp upstream