rs37481977 SNP Detail

Summary

• ID
  rs37481977
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37166197 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCAGCAC AAGGGTGACC
  TTGTGGTCCT GGGAGCAGCT GCTGTCAATG CCAGCTCATG CTTTTAAGGG TGACCACCCA
  GTGTTGGAGC AGCTGCAGCT CTGATCCCAG AGATCTTGCC CTAGCTAGGT ATCCCTGAGA
  CTGGAAGGGT CAGACAGGCT TAATAGAACC AGTGATTTCT GGCTTGTTAA CTAATCTAAT
  Y
  AATAGGGGCC TTAAGCTCTC TGGCTCCATT TATATTCTAC CAGTTCTTGG CCTGGGTTCC
  TCAAAGGCAA ATCCGGATCC TCCAAATACA CAGATAAGAC TTGGAGGCAC TCCACAGGTA
  CCCGCTTGTG CGCTTGTGTT TGCAGATACG GGGTGGCAAA CCAAAAAGGA TGAAGACTCC
  TAGGCACCCT GTTTGTTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50674835	NES14008186	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37481977					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50674835	NES14008186	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37166197 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21569	CpG island 21569	271 bp proximal
Gm10177	predicted gene 10177	1720 bp downstream
Gm48081	predicted gene, 48081	597 bp upstream
Gm65989	predicted gene, 65989	1536 bp downstream
Rr676656	regulatory region 676656	within coordinates
Rr676657	regulatory region 676657	503 bp proximal
Rr676658	regulatory region 676658	608 bp proximal
Rr676659	regulatory region 676659	827 bp proximal
Rr676660	regulatory region 676660	1135 bp proximal
Slc37a2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	within coordinates
Tssr88821	transcription start site region 88821	456 bp downstream
Tssr88822	transcription start site region 88822	480 bp downstream
Tssr88823	transcription start site region 88823	502 bp downstream
Tssr88824	transcription start site region 88824	528 bp downstream
Tssr88825	transcription start site region 88825	543 bp downstream
Tssr88826	transcription start site region 88826	629 bp downstream
Tssr88827	transcription start site region 88827	722 bp downstream
Tssr88828	transcription start site region 88828	745 bp downstream
Tssr88829	transcription start site region 88829	768 bp downstream
Tssr88830	transcription start site region 88830	784 bp downstream
Tssr88831	transcription start site region 88831	829 bp downstream