rs37483312 SNP Detail

Summary

• ID
  rs37483312
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:95900671 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTCC CCTCCTGGGT CATACCTGTC
  Y
  TTTCCTGGGT CACACCTGTG AAGAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss51137179	NES14339040	PERLEGEN	MM_PANEL2	f	SNP			C	T	C		T		T	T	T
ss144993677	ENSMUSSNP1299900	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C				C
ss324489708	CHEV_13_96534118	CHEVERUD	SCREENING_POP	f	SNP								C				C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs37483312					SNP	C	C	C	T	C	C	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51137179	NES14339040	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:95900671 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm32702	predicted gene, 32702			925 bp upstream
Iqgap2	IQ motif containing GTPase activating protein 2			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr484141	regulatory region 484141			within coordinates
Rr484142	regulatory region 484142			523 bp proximal
Rr484143	regulatory region 484143			939 bp proximal
Tssr120725	transcription start site region 120725			958 bp upstream
Tssr120726	transcription start site region 120726			1162 bp upstream