rs37483348 SNP Detail

Summary

• ID
  rs37483348
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:9961902 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTAGGGGTG CCCTAAATGA
  GCGGTTAGAC TTTATTCAGG AAATGATGGT GCACTGAGGC TTCTGTCCTT GTGTTGTTGG
  CAAATGGCAG TTGTCGAGCA TCCTGCGGTG AAAGCTTAGA GGAAATTGAG GGCAATCCTT
  TGCCCAGAGC ATGATGGCTC AGTGTGAGGT GTTTCCTGGC TTGGGTTGAT TGGTAGATGA
  M
  TTGACCCGAT GTTTCATTCA GAAACCAGAC CGTGATGACT GGGAGAGCGG GCTGAATGCA
  ATGGAGTGTG CACTGCACTT GGAAAAGAGT GTGAATCAGT CACTACTGGA ACTGCACAAA
  CTGGCTACTG ACAAGAATGA TCCCCACGTG AGTATCGGAA ACGTGGGATG AGTGGAGGAG
  ATGATTTGCC GCAGGACTTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50605200	NES13645673	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37483348					SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50605200	NES13645673	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:9961902 () rs orientation: forward

Symbol	Name	Function Class
Best1	bestrophin 1	636 bp downstream
Cpgi10595	CpG island 10595	1153 bp distal
Fth1	ferritin heavy polypeptide 1	within coordinates
Rr543965	regulatory region 543965	1805 bp distal
Rr543966	regulatory region 543966	536 bp distal
Rr543967	regulatory region 543967	within coordinates
Tssr155003	transcription start site region 155003	1827 bp downstream
Tssr155004	transcription start site region 155004	1686 bp downstream
Tssr155005	transcription start site region 155005	1420 bp downstream
Tssr155006	transcription start site region 155006	319 bp downstream
Tssr155007	transcription start site region 155007	246 bp downstream
Tssr155008	transcription start site region 155008	19 bp upstream
Tssr155009	transcription start site region 155009	365 bp upstream
Tssr155010	transcription start site region 155010	555 bp upstream
Tssr158135	transcription start site region 158135	1971 bp upstream
Tssr158136	transcription start site region 158136	1598 bp upstream
Tssr158137	transcription start site region 158137	301 bp upstream
Tssr158138	transcription start site region 158138	212 bp upstream
Tssr158139	transcription start site region 158139	47 bp downstream
Tssr158140	transcription start site region 158140	268 bp downstream
Tssr158141	transcription start site region 158141	319 bp downstream
Tssr158142	transcription start site region 158142	335 bp downstream
Tssr158143	transcription start site region 158143	394 bp downstream
Tssr158144	transcription start site region 158144	551 bp downstream