rs37485146 SNP Detail

Summary

• ID
  rs37485146
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:55242191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACACAGAGA AAGAGACAGT
  CGTGCTGCAT CTAACCTAAG GGCGGAGGTC CCTCTAGCTG GACTTTCCTG TCCTGCGAAC
  GCAGCGGGGA ACAACGTCAC CTCCGTTTCT CTGGCAATGA ACCCAGGGCC ACCTCAACTC
  GTTTTCATTT GGATTTTCAT CTTGGAGAAG AGCTAGTGGG ACCAGCGGGA GCAGGTGGAC
  Y
  GTGTTGATGC AAAGGTGGCT CGTGTTTCAG CCCCTGGGGA TTGAGGTTAA AGGCTTTGAA
  AACCGGCTAG GGTAGCTTTG GATATCTGTC TCCTCCTAGT CAAAAGCGGT TCCACTTTCA
  GTTGTGAAGG AGGAGGGAAA AAAAAGCCAA ACCAGGAAGT GAAGTCCCCA GCACCAGCAT
  GTCAGAAAGC CCGGCTATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51221523	NES14297450	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs37485146					SNP	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51221523	NES14297450	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:55242191 () rs orientation: forward

Symbol	Name	Function Class
Acsl5	acyl-CoA synthetase long-chain family member 5	within coordinates
Cpgi11077	CpG island 11077	256 bp proximal
Rr370538	regulatory region 370538	125 bp upstream
Rr406037	regulatory region 406037	876 bp upstream
Tssr5558	transcription start site region 5558	1916 bp downstream
Tssr157068	transcription start site region 157068	1856 bp downstream
Tssr157069	transcription start site region 157069	1815 bp downstream
Tssr157070	transcription start site region 157070	1796 bp downstream
Tssr157071	transcription start site region 157071	81 bp downstream
Tssr157072	transcription start site region 157072	33 bp downstream
Tssr157073	transcription start site region 157073	141 bp upstream
Tssr157074	transcription start site region 157074	207 bp upstream
Tssr157075	transcription start site region 157075	222 bp upstream